STRINGSTRING
R2601_12111 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_12111" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_12111Uncharacterized protein (213 aa)    
Predicted Functional Partners:
R2601_12106
Uncharacterized protein (303 aa)
 
          0.743
mepA
Penicillin-insensitive murein endopeptidase (306 aa)
              0.720
R2601_12096
Major facilitator superfamily (MFS) transporter (445 aa)
              0.691
R2601_12091
Uncharacterized protein (177 aa)
              0.517
R2601_12116
Uncharacterized protein (140 aa)
              0.483
R2601_24579
Uncharacterized protein (292 aa)
 
        0.454
tgt
tRNA-guanine transglycosylase ; Exchanges the guanine residue with 7-aminomethyl-7- deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hypermodified nucleoside queuosine (Q) (7-(((4,5-cis- dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) (375 aa)
              0.451
rpmB
50S ribosomal protein L28 (96 aa)
              0.451
R2601_12081
ATP-dependent DNA helicase RecQ (684 aa)
 
          0.422
R2601_12086
Uncharacterized protein (94 aa)
              0.407
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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