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dapF protein (Pelagibaca bermudensis) - STRING interaction network
"dapF" - Diaminopimelate epimerase in Pelagibaca bermudensis
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second shell of interactors
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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dapFDiaminopimelate epimerase ; Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan (279 aa)    
Predicted Functional Partners:
lysA
Diaminopimelate decarboxylase ; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine (421 aa)
 
 
  0.998
dapE
N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase ; Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls (381 aa)
       
  0.988
R2601_11464
Probable succinyl-diaminopimelate desuccinylase (454 aa)
       
  0.981
R2601_14240
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) (1110 aa)
 
 
  0.925
R2601_12151
MiaB-like tRNA modifying enzyme (417 aa)
 
        0.907
R2601_08848
Putative Ornithine decarboxylase (375 aa)
   
 
  0.904
murE
UDP-N-acetylmuramyl-tripeptide synthetase (494 aa)
 
 
  0.904
R2601_05208
Carboxynorspermidine/carboxyspermidine decarboxylase ; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine (376 aa)
   
 
  0.886
R2601_08626
4-hydroxy-tetrahydrodipicolinate reductase ; Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate (226 aa)
 
   
  0.866
R2601_12146
Negative transcriptional regulator (215 aa)
              0.863
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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