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R2601_12201 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_12201" - Deoxyribodipyrimidine photolyase-related protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_12201Deoxyribodipyrimidine photolyase-related protein (510 aa)    
Predicted Functional Partners:
R2601_12206
Uncharacterized protein (50 aa)
 
          0.966
R2601_27313
Uncharacterized protein (232 aa)
 
          0.773
R2601_12231
Putative cyclopropane/cyclopropene fatty acid synthesis protein (262 aa)
 
          0.759
R2601_12243
FAD dependent oxidoreductase (304 aa)
 
          0.744
R2601_25376
Deoxyribodipyrimidine photolyase (473 aa)
 
     
  0.740
R2601_05433
DNA photolyase-like protein (401 aa)
 
     
  0.721
R2601_12221
Uncharacterized protein (235 aa)
 
          0.660
R2601_12211
Uncharacterized protein (133 aa)
              0.579
R2601_12226
Cyclopropane-fatty-acyl-phospholipid synthase (390 aa)
 
     
  0.493
R2601_12236
Probable dehydrogenase (85 aa)
   
          0.417
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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