STRINGSTRING
R2601_12216 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_12216" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_12216Uncharacterized protein (234 aa)    
Predicted Functional Partners:
R2601_12221
Uncharacterized protein (235 aa)
              0.859
R2601_12236
Probable dehydrogenase (85 aa)
              0.759
R2601_12231
Putative cyclopropane/cyclopropene fatty acid synthesis protein (262 aa)
              0.759
R2601_12226
Cyclopropane-fatty-acyl-phospholipid synthase (390 aa)
              0.759
R2601_19614
Lipoprotein, putative (312 aa)
   
          0.726
R2601_22002
Uncharacterized protein (135 aa)
   
          0.699
R2601_09078
Lipoprotein, putative (286 aa)
   
          0.697
R2601_13819
Uncharacterized protein (272 aa)
   
          0.654
R2601_09797
Uncharacterized protein (237 aa)
   
          0.633
R2601_19225
Lipoprotein, putative (787 aa)
   
          0.614
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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