STRINGSTRING
R2601_12231 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_12231" - Putative cyclopropane/cyclopropene fatty acid synthesis protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_12231Putative cyclopropane/cyclopropene fatty acid synthesis protein (262 aa)    
Predicted Functional Partners:
R2601_12226
Cyclopropane-fatty-acyl-phospholipid synthase (390 aa)
        0.988
R2601_12236
Probable dehydrogenase (85 aa)
 
          0.967
R2601_12221
Uncharacterized protein (235 aa)
 
     
  0.945
R2601_12243
FAD dependent oxidoreductase (304 aa)
 
        0.876
R2601_14245
Cyclopropane-fatty-acyl-phospholipid synthase (410 aa)
        0.770
R2601_12201
Deoxyribodipyrimidine photolyase-related protein (510 aa)
 
          0.759
R2601_12216
Uncharacterized protein (234 aa)
              0.759
R2601_12211
Uncharacterized protein (133 aa)
 
          0.756
R2601_25376
Deoxyribodipyrimidine photolyase (473 aa)
 
        0.676
R2601_05433
DNA photolyase-like protein (401 aa)
 
        0.676
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (11%) [HD]