STRINGSTRING
R2601_12248 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_12248" - RNA polymerase sigma-70 factor in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_12248RNA polymerase sigma-70 factor (181 aa)    
Predicted Functional Partners:
R2601_12253
Uncharacterized protein (222 aa)
 
          0.980
R2601_23690
Uncharacterized protein (232 aa)
 
          0.861
R2601_12243
FAD dependent oxidoreductase (304 aa)
 
          0.792
R2601_08046
Uncharacterized protein (184 aa)
 
          0.721
rpoC
Transcriptase subunit beta’ ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1418 aa)
       
 
  0.566
R2601_21311
Beta-Ig-H3/Fasciclin (159 aa)
 
          0.552
R2601_23333
Sensory box sensor histidine kianse/response regulator (594 aa)
     
 
  0.551
R2601_12231
Putative cyclopropane/cyclopropene fatty acid synthesis protein (262 aa)
 
          0.525
R2601_09305
Periplasmic serine protease, DO/DeqQ family protein (462 aa)
   
   
  0.518
R2601_08321
Periplasmic serine protease, DO/DeqQ family protein (494 aa)
   
   
  0.518
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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