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R2601_12383 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_12383" - ATP-dependent helicase, DEAD/DEAH box family protein in Pelagibaca bermudensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_12383ATP-dependent helicase, DEAD/DEAH box family protein (807 aa)    
Predicted Functional Partners:
R2601_12393
Uncharacterized protein (224 aa)
 
          0.928
R2601_08953
DNA ligase (530 aa)
 
          0.871
R2601_08948
Uncharacterized protein (339 aa)
 
          0.870
R2601_12388
Uncharacterized protein (47 aa)
              0.599
R2601_12378
Probable glutathione S-transferase protein (286 aa)
              0.580
R2601_21211
Uncharacterized protein (155 aa)
   
          0.560
R2601_24300
Uncharacterized protein (136 aa)
   
          0.523
R2601_23825
Uncharacterized protein (99 aa)
   
          0.491
fpg
DNA-(apurinic or apyrimidinic site) lyase MutM ; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3’- and 5’-phosphates (283 aa)
   
        0.456
R2601_12398
Putative Phenylacetic acid degradation protein PAAI (135 aa)
              0.439
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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