STRINGSTRING
R2601_12438 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_12438" - Uncharacterized protein in Pelagibaca bermudensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_12438Uncharacterized protein (276 aa)    
Predicted Functional Partners:
R2601_12443
Peptidoglycan-associated lipoprotein (174 aa)
   
        0.901
tilS
tRNA(Ile)-lysidine synthetase ; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine (448 aa)
              0.877
tolB
Protein TolB ; Involved in the TonB-independent uptake of proteins (446 aa)
   
   
  0.843
ftsH
ATP-dependent zinc metalloprotease FtsH ; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins (637 aa)
 
          0.777
R2601_12463
Proton transporter TolQ (231 aa)
 
     
  0.678
R2601_12458
Biopolymer transport protein, ExbD/TolR family (134 aa)
   
   
  0.647
R2601_12453
Possible TolA protein (379 aa)
 
          0.615
R2601_12468
Putative thioesterase (129 aa)
   
        0.549
R2601_16977
Uncharacterized protein (296 aa)
   
          0.490
R2601_12423
Trans-aconitate methyltransferase (237 aa)
              0.489
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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