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R2601_12443 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_12443" - Peptidoglycan-associated lipoprotein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_12443Peptidoglycan-associated lipoprotein (174 aa)    
Predicted Functional Partners:
tolB
Protein TolB ; Involved in the TonB-independent uptake of proteins (446 aa)
 
 
  0.997
R2601_12463
Proton transporter TolQ (231 aa)
 
 
  0.936
R2601_17684
Lipoprotein releasing system transmembrane protein LolE (428 aa)
   
 
  0.917
R2601_12438
Uncharacterized protein (276 aa)
   
        0.901
R2601_12458
Biopolymer transport protein, ExbD/TolR family (134 aa)
 
 
  0.897
bamA
Outer membrane protein assembly factor BamA ; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (756 aa)
   
 
  0.880
tilS
tRNA(Ile)-lysidine synthetase ; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine (448 aa)
              0.877
atpG
F-ATPase gamma subunit ; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex (293 aa)
 
 
    0.764
R2601_13980
F-ATPase subunit alpha ; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit (512 aa)
   
 
  0.757
R2601_18093
F-ATPase subunit alpha ; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit (510 aa)
   
 
  0.756
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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