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R2601_12458 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_12458" - Biopolymer transport protein, ExbD/TolR family in Pelagibaca bermudensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_12458Biopolymer transport protein, ExbD/TolR family (134 aa)    
Predicted Functional Partners:
R2601_12463
Proton transporter TolQ (231 aa)
 
  0.996
tolB
Protein TolB ; Involved in the TonB-independent uptake of proteins (446 aa)
 
   
  0.925
R2601_12443
Peptidoglycan-associated lipoprotein (174 aa)
 
 
  0.897
lpxK
Lipid A 4’-kinase ; Transfers the gamma-phosphate of ATP to the 4’-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1- P) to form tetraacyldisaccharide 1,4’-bis-phosphate (lipid IVA) (329 aa)
 
   
  0.804
R2601_12453
Possible TolA protein (379 aa)
              0.762
R2601_12468
Putative thioesterase (129 aa)
 
 
  0.746
bamA
Outer membrane protein assembly factor BamA ; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (756 aa)
 
      0.736
R2601_17938
Putative 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) (403 aa)
   
 
      0.649
ftsH
ATP-dependent zinc metalloprotease FtsH ; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins (637 aa)
 
          0.647
R2601_12438
Uncharacterized protein (276 aa)
   
   
  0.647
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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