STRINGSTRING
R2601_12478 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_12478" - Lipoprotein, putative in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_12478Lipoprotein, putative (161 aa)    
Predicted Functional Partners:
R2601_12473
Uncharacterized protein (342 aa)
 
          0.972
leuS
Leucyl-tRNA synthetase (856 aa)
              0.887
R2601_11544
Uncharacterized protein (263 aa)
   
          0.774
R2601_15502
Uncharacterized protein (202 aa)
   
          0.761
R2601_25066
Uncharacterized protein (190 aa)
   
          0.750
R2601_16565
Uncharacterized protein (94 aa)
   
          0.749
R2601_08446
Putative phage tail-head adaptor (107 aa)
   
          0.702
R2601_14190
Uncharacterized protein (110 aa)
   
          0.690
R2601_21206
Uncharacterized protein (64 aa)
   
          0.689
R2601_23338
Uncharacterized protein (198 aa)
   
          0.687
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (11%) [HD]