STRINGSTRING
R2601_12503 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_12503" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_12503Uncharacterized protein (402 aa)    
Predicted Functional Partners:
R2601_12498
Uncharacterized protein (97 aa)
              0.658
R2601_21156
Uncharacterized protein (408 aa)
   
          0.569
R2601_26046
Segregation and condensation protein A (268 aa)
 
          0.524
R2601_17007
Pseudouridine synthase (179 aa)
     
      0.506
R2601_16997
Pseudouridine synthase (283 aa)
     
      0.506
R2601_13990
Uncharacterized protein (249 aa)
   
          0.452
R2601_26041
Segregation and condensation protein B ; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves (256 aa)
              0.451
R2601_25736
Uncharacterized protein (274 aa)
              0.451
R2601_22472
Acyltransferase, putative (274 aa)
              0.451
R2601_20336
Sugar isomerase (SIS) (285 aa)
              0.451
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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