STRINGSTRING
R2601_12545 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_12545" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_12545Uncharacterized protein (137 aa)    
Predicted Functional Partners:
R2601_05308
TRAP dicarboxylate family transporter, DctQ subunit (186 aa)
   
          0.621
R2601_00620
Uncharacterized protein (337 aa)
   
          0.612
R2601_14405
Uncharacterized protein (203 aa)
   
          0.575
R2601_23920
Uncharacterized protein (210 aa)
   
          0.566
R2601_01733
TRAP-type mannitol/chloroaromatic compound transport system, small permease component (173 aa)
   
          0.553
R2601_15885
Uncharacterized protein (295 aa)
   
          0.540
R2601_05313
TRAP dicarboxylate family transporter, DctP subunit (347 aa)
   
          0.525
R2601_11424
Transcriptional regulator, LuxR family protein (267 aa)
   
          0.513
R2601_26356
Uncharacterized protein (84 aa)
   
          0.502
R2601_15985
Adenylate/guanylate cyclase/hydrolase, alpha/beta fold family protein (507 aa)
   
          0.480
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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