STRINGSTRING
R2601_12680 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_12680" - Arsenate reductase in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_12680Arsenate reductase (112 aa)    
Predicted Functional Partners:
R2601_12675
Dihydroorotate dehydrogenase (quinone) ; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor (352 aa)
              0.887
R2601_12670
Uncharacterized protein (112 aa)
              0.887
R2601_16835
Transcriptional regulator/arsenate reductase (264 aa)
   
 
  0.759
R2601_12665
Uncharacterized protein (72 aa)
              0.671
R2601_19185
Low molecular weight phosphotyrosine protein phosphatase (151 aa)
   
 
  0.664
R2601_09350
Arsenate reductase (148 aa)
   
 
  0.659
rpoA
Transcriptase subunit alpha ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (338 aa)
       
      0.643
R2601_02623
NADPH-dependent FMN reductase (237 aa)
         
  0.591
R2601_02613
Transcriptional regulator, ArsR familyy protein (112 aa)
         
  0.534
R2601_12660
Uncharacterized protein (190 aa)
              0.503
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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