STRINGSTRING
R2601_12785 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_12785" - Transcriptional regulator TetR family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_12785Transcriptional regulator TetR family protein (206 aa)    
Predicted Functional Partners:
R2601_07921
Uncharacterized protein (281 aa)
   
          0.663
R2601_08581
Beta-lactamase related protein (388 aa)
   
          0.657
R2601_12780
Uncharacterized protein (215 aa)
 
          0.640
R2601_15885
Uncharacterized protein (295 aa)
   
          0.591
R2601_12790
Cation/multidrug efflux pump, membrane-fusion protein (397 aa)
              0.581
R2601_20601
Uncharacterized protein (181 aa)
   
          0.570
R2601_12765
Putative thioesterase (143 aa)
 
          0.557
R2601_14795
Uncharacterized protein (246 aa)
   
          0.550
R2601_12795
Cation/multidrug efflux pump, RND family protein (1044 aa)
              0.497
R2601_07846
Uncharacterized protein (533 aa)
   
          0.460
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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