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R2601_12835 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_12835" - Isobutyryl-CoA dehydrogenase in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_12835Isobutyryl-CoA dehydrogenase (562 aa)    
Predicted Functional Partners:
R2601_12730
AMP-binding enzyme (654 aa)
 
  0.994
R2601_25791
Enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase (733 aa)
   
  0.994
R2601_01080
Acyl-CoA synthase (537 aa)
   
  0.991
R2601_18288
AMP-binding protein (541 aa)
   
 
  0.991
R2601_18553
Enoyl-CoA hydratase/isomerase-3-hydroxyacyl-CoA dehydrogenase, 3-hydroxyacyl-CoA dehydrogenase, NAD-binding protein (666 aa)
   
  0.987
R2601_17988
Enoyl-CoA hydratase (634 aa)
   
  0.987
R2601_10779
Uncharacterized protein (343 aa)
 
 
  0.987
R2601_10072
Possible acyl-CoA sythetase (633 aa)
   
 
  0.983
R2601_20054
CoA-binding protein (706 aa)
       
  0.977
R2601_02558
Acyl-CoA synthetase, putative (681 aa)
       
  0.977
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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