STRINGSTRING
R2601_12885 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_12885" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_12885Uncharacterized protein (110 aa)    
Predicted Functional Partners:
R2601_12880
GTPase Era ; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism (301 aa)
              0.887
R2601_23785
Uncharacterized protein (258 aa)
   
          0.731
R2601_13759
Uncharacterized protein (88 aa)
   
          0.717
R2601_21121
Putative FtsL (114 aa)
   
          0.716
R2601_14190
Uncharacterized protein (110 aa)
   
          0.716
R2601_13739
Uncharacterized protein (95 aa)
   
          0.706
R2601_16750
Uncharacterized protein (173 aa)
   
          0.658
R2601_10634
Uncharacterized protein (179 aa)
   
          0.656
R2601_14815
Hydrolase, NUDIX family protein (145 aa)
   
          0.653
R2601_14490
Flagellar protein FlaF, putative (125 aa)
   
          0.635
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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