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rlmH protein (Pelagibaca bermudensis) - STRING interaction network
"rlmH" - rRNA in Pelagibaca bermudensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
rlmHrRNA (pseudouridine-N3-)-methyltransferase RlmH ; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA (156 aa)    
Predicted Functional Partners:
rsfS
Ribosomal silencing factor RsfS ; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation (123 aa)
 
   
  0.948
prmA
Ribosomal protein L11 methyltransferase ; Methylates ribosomal protein L11 (292 aa)
 
     
  0.780
R2601_14170
Ribonuclease R (506 aa)
 
     
  0.659
R2601_14165
Ribonuclease R (235 aa)
 
     
  0.657
rplU
50S ribosomal protein L21 ; This protein binds to 23S rRNA in the presence of protein L20 (192 aa)
 
     
  0.621
R2601_10639
Beta-lactamase (625 aa)
   
        0.578
engB
Probable GTP-binding protein EngB ; Necessary for normal cell division and for the maintenance of normal septation (217 aa)
 
   
  0.566
ispDF
Bifunctional enzyme IspD/IspF ; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF) (378 aa)
   
        0.564
dusA
tRNA-dihydrouridine synthase A ; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs (315 aa)
 
        0.561
R2601_12990
Glutamate synthase, large subunit (1537 aa)
              0.554
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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