STRINGSTRING
R2601_13099 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_13099" - OpgC protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_13099OpgC protein (400 aa)    
Predicted Functional Partners:
R2601_13094
Glycosyl transferase, family 2 (581 aa)
 
          0.916
R2601_13084
Periplasmic glucan biosynthesis protein (142 aa)
 
          0.860
R2601_13089
Uncharacterized protein (60 aa)
              0.681
R2601_13104
3-carboxy-cis,cis-muconate cycloisomerase (350 aa)
              0.616
R2601_13079
Periplasmic glucan biosynthesis protein (364 aa)
 
          0.551
R2601_13744
Uncharacterized protein (234 aa)
   
          0.541
R2601_21221
Uncharacterized protein (249 aa)
   
          0.490
R2601_13644
Uncharacterized protein (679 aa)
   
          0.481
R2601_15417
Uncharacterized protein (867 aa)
   
          0.443
R2601_16845
Uncharacterized protein (271 aa)
   
          0.441
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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