STRINGSTRING
R2601_13114 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_13114" - Transcriptional regulatory protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_13114Transcriptional regulatory protein (287 aa)    
Predicted Functional Partners:
R2601_13109
4-hydroxybenzoate 3-monooxygenase (392 aa)
 
     
  0.883
R2601_18668
Putative sarcosine dehydrogenase protein (853 aa)
       
      0.734
R2601_23635
Uncharacterized protein (424 aa)
   
 
      0.495
R2601_13139
3-oxoadipate enol-lactone hydrolase (262 aa)
   
 
 
  0.474
R2601_13124
Protocatechuate 3,4-dioxygenase alpha subunit (230 aa)
 
     
  0.473
R2601_12615
3-oxoadipate enol-lactone hydrolase (262 aa)
   
 
 
  0.467
R2601_22512
Transcriptional regulator, LysR family protein (301 aa)
     
   
  0.467
R2601_21286
Transcriptional regulator, LysR family protein (320 aa)
     
   
  0.467
R2601_18663
Probable LysR-family transcriptional activator (290 aa)
     
   
  0.467
R2601_18198
Chromosome replication initiation inhibitor protein (291 aa)
     
   
  0.467
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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