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R2601_13144 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_13144" - Pca operon transcriptional activator PcaQ in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_13144Pca operon transcriptional activator PcaQ (175 aa)    
Predicted Functional Partners:
R2601_06498
Pca operon transcriptional activator PcaQ (134 aa)
 
          0.881
R2601_13124
Protocatechuate 3,4-dioxygenase alpha subunit (230 aa)
 
   
  0.867
R2601_13129
Protocatechuate 3,4-dioxygenase beta subunit (241 aa)
 
   
  0.840
R2601_07688
Transcriptional regulatory protein (293 aa)
   
          0.775
R2601_00570
Transcriptional regulatory protein (308 aa)
   
          0.772
R2601_19899
Transcriptional regulator, LysR family protein (296 aa)
   
          0.771
R2601_06368
Transcriptional regulator, LysR family protein (305 aa)
   
        0.766
R2601_13134
4-carboxymuconolactone decarboxylase (128 aa)
         
  0.734
R2601_13139
3-oxoadipate enol-lactone hydrolase (262 aa)
 
     
  0.728
R2601_10564
Probable transcriptional regulator (291 aa)
   
        0.712
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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