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R2601_13164 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_13164" - TRAP-T family transporter, DctP (Periplasmic binding) subunit in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_13164TRAP-T family transporter, DctP (Periplasmic binding) subunit (367 aa)    
Predicted Functional Partners:
R2601_13169
Uncharacterized protein (179 aa)
 
   
    0.993
R2601_13174
TRAP-T family transporter, DctM (12 TMs) subunit (426 aa)
 
   
    0.988
R2601_13159
Putative transcription regulator protein (158 aa)
 
          0.758
R2601_13184
Enoyl-CoA hydratase (255 aa)
 
          0.690
R2601_20376
Uncharacterized protein (463 aa)
 
   
    0.689
R2601_17439
Bacterial extracellular solute-binding protein, family 7 (323 aa)
   
   
    0.688
R2601_05353
Uncharacterized protein (333 aa)
   
   
    0.668
R2601_23625
TRAP-type C4-dicarboxylate transport system, large permease component (426 aa)
 
   
    0.665
R2601_23620
Uncharacterized protein (169 aa)
   
          0.656
R2601_03883
TRAP-T family transporter, DctM (12 TMs) subunit (246 aa)
   
   
    0.641
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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