STRINGSTRING
R2601_13234 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_13234" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_13234Uncharacterized protein (183 aa)    
Predicted Functional Partners:
R2601_23775
2-isopropylmalate synthase (545 aa)
         
    0.900
ilvC
Alpha-keto-beta-hydroxylacyl reductoisomerase (340 aa)
         
    0.900
R2601_19372
Ketol-acid reductoisomerase (64 aa)
         
    0.900
leuA
Alpha-isopropylmalate synthase ; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) (521 aa)
         
    0.900
R2601_15155
2-isopropylmalate synthase (282 aa)
         
    0.900
R2601_14775
Uncharacterized protein (238 aa)
         
    0.900
R2601_14365
Uncharacterized protein (488 aa)
         
    0.900
R2601_10939
Branched-chain amino acid aminotransferase (289 aa)
         
    0.900
R2601_13229
Uncharacterized protein (257 aa)
              0.582
R2601_13224
Uncharacterized protein (124 aa)
              0.564
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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