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R2601_13239 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_13239" - CAAX amino terminal protease family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_13239CAAX amino terminal protease family protein (295 aa)    
Predicted Functional Partners:
R2601_18173
Uncharacterized protein (447 aa)
   
          0.776
R2601_21802
Uncharacterized protein (117 aa)
   
          0.768
R2601_26991
Uncharacterized protein (311 aa)
   
          0.753
R2601_25206
Uncharacterized protein (586 aa)
   
          0.748
R2601_11169
Uncharacterized protein (80 aa)
   
          0.732
R2601_13249
FolC bifunctional protein (425 aa)
   
        0.703
R2601_11459
Uncharacterized protein (309 aa)
   
          0.699
accD
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta ; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA (305 aa)
              0.686
R2601_10549
Cytochrome c oxidase, cbb3-type, subunit IV (66 aa)
   
          0.670
R2601_21176
Uncharacterized protein (84 aa)
   
          0.666
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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