STRINGSTRING
R2601_13319 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_13319" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_13319Uncharacterized protein (169 aa)    
Predicted Functional Partners:
R2601_13314
Probable C4-dicarboxylate transport system, substrate-binding protein (333 aa)
 
 
  0.994
R2601_13324
Uncharacterized protein (425 aa)
 
 
  0.987
R2601_22227
TRAP-T family transporter, periplasmic binding protein, DctP (324 aa)
 
 
  0.803
R2601_00580
C4-dicarboxylate transport system permease small protein (190 aa)
   
   
    0.785
R2601_05353
Uncharacterized protein (333 aa)
 
 
  0.776
R2601_01908
Putative signal peptide protein (193 aa)
 
 
  0.769
R2601_02208
Uncharacterized protein (326 aa)
 
 
  0.763
R2601_22222
TRAP-T family transporter, DctQ (4TMs) subunit (163 aa)
   
          0.727
R2601_01095
TRAP dicarboxylate transporter-DctP subunit (333 aa)
 
 
  0.716
R2601_00875
Putative periplasmic binding protein (322 aa)
 
 
  0.715
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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