STRINGSTRING
R2601_13359 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_13359" - Sensor histidine kinase in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_13359Sensor histidine kinase (480 aa)    
Predicted Functional Partners:
R2601_13364
Two-component response regulator (262 aa)
 
          0.968
R2601_13369
Probable binding protein component of ABC sugar transporter (414 aa)
 
          0.883
R2601_13374
Binding-protein-dependent transport systems inner membrane component (290 aa)
 
          0.795
R2601_13384
Putative atp-binding abc transporter protein (365 aa)
 
          0.761
R2601_13379
Binding-protein-dependent transport systems inner membrane component (304 aa)
 
          0.752
R2601_06988
DNA-binding response regulator (240 aa)
 
          0.636
R2601_06953
Rhodanese-related sulfurtransferase (157 aa)
   
          0.588
R2601_01828
Probable two-component response regulator (244 aa)
 
          0.576
R2601_15965
Uncharacterized protein (79 aa)
   
          0.542
R2601_23850
Uncharacterized protein (285 aa)
   
          0.521
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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