STRINGSTRING
R2601_13419 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_13419" - Transcriptional regulatory protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_13419Transcriptional regulatory protein (139 aa)    
Predicted Functional Partners:
R2601_13424
Nitrile hydratase regulator (342 aa)
 
        0.641
R2601_07856
L-2,4-diaminobutyric acid acetyltransferase (178 aa)
 
          0.526
R2601_25021
DNA-binding response regulator, LuxR family protein (234 aa)
     
 
  0.521
R2601_21622
DNA-binding response regulator, LuxR family protein (214 aa)
     
 
  0.521
R2601_18503
Response regulator (119 aa)
     
 
  0.521
R2601_15120
DNA-binding response regulator, LuxR family protein (204 aa)
     
 
  0.521
R2601_11124
DNA-binding response regulator, LuxR family protein (204 aa)
     
 
  0.521
R2601_04858
Putative transcriptional regulator protein (241 aa)
     
 
  0.521
R2601_05568
ABC transporter, periplasmic substrate-binding protein (301 aa)
 
          0.518
R2601_20164
Drug resistance transporter EmrB/QacA subfamily protein (505 aa)
         
  0.472
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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