STRINGSTRING
R2601_13584 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_13584" - UPF0178 protein R2601_13584 in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_13584UPF0178 protein R2601_13584 (150 aa)    
Predicted Functional Partners:
R2601_13589
Malonate transporter, putative (308 aa)
              0.875
R2601_13579
HAD-superfamily hydrolase, subfamily IA, variant 1 family protein (206 aa)
              0.873
R2601_13574
Ornithine cyclodeaminase/mu-crystallin family protein (303 aa)
              0.871
R2601_13594
Uncharacterized protein (59 aa)
              0.697
R2601_04948
S-formylglutathione hydrolase ; Serine hydrolase involved in the detoxification of formaldehyde (274 aa)
 
          0.550
R2601_13599
ABC transporter, ATP-binding protein (308 aa)
              0.532
rplT
50S ribosomal protein L20 ; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (121 aa)
              0.451
dnaG
DNA primase ; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication (653 aa)
              0.451
R2601_04943
S-(hydroxymethyl)glutathione dehydrogenase (375 aa)
              0.450
R2601_02018
S-(hydroxymethyl)glutathione dehydrogenase (387 aa)
              0.450
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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