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R2601_13589 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_13589" - Malonate transporter, putative in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_13589Malonate transporter, putative (308 aa)    
Predicted Functional Partners:
R2601_13584
UPF0178 protein R2601_13584 (150 aa)
              0.875
R2601_13579
HAD-superfamily hydrolase, subfamily IA, variant 1 family protein (206 aa)
              0.869
R2601_13574
Ornithine cyclodeaminase/mu-crystallin family protein (303 aa)
              0.868
R2601_24799
Predicted permease (311 aa)
   
          0.774
R2601_13594
Uncharacterized protein (59 aa)
              0.697
R2601_10879
Uncharacterized protein (71 aa)
   
          0.642
R2601_14750
NADP-dependent malic enzyme (751 aa)
         
  0.557
R2601_10082
Malic enzyme (759 aa)
         
  0.557
R2601_13599
ABC transporter, ATP-binding protein (308 aa)
              0.532
R2601_27006
Probable spermidineputrescine ABC transporter permease protein (261 aa)
     
        0.467
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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