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R2601_13599 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_13599" - ABC transporter, ATP-binding protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_13599ABC transporter, ATP-binding protein (308 aa)    
Predicted Functional Partners:
R2601_12333
Transport permease protein (269 aa)
  0.968
R2601_17057
Transport permease protein (256 aa)
  0.967
R2601_04793
Transport permease protein (264 aa)
   
  0.712
R2601_13594
Uncharacterized protein (59 aa)
              0.690
R2601_23505
ABC heme exporter, inner membrane subunit CcmC (242 aa)
       
  0.662
R2601_23500
Heme exporter protein B ; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes (218 aa)
       
    0.660
R2601_18810
Regulatory protein, putative (696 aa)
   
   
  0.642
ctaA
Cytochrome aa3-controlling protein ; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group (381 aa)
       
    0.614
R2601_21281
Histidinol dehydrogenase ; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine (437 aa)
   
      0.539
R2601_09365
Histidinol dehydrogenase ; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine (433 aa)
   
      0.539
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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