STRINGSTRING
R2601_13654 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_13654" - NLP/P60 family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_13654NLP/P60 family protein (276 aa)    
Predicted Functional Partners:
R2601_13659
Cytosol aminopeptidase family protein (460 aa)
              0.914
R2601_12528
Mandelate racemase/muconate lactonizing enzyme family protein (329 aa)
 
          0.742
R2601_13649
Uncharacterized protein (115 aa)
              0.662
R2601_13664
Uncharacterized protein (130 aa)
 
          0.615
R2601_11896
TPR domain protein (574 aa)
   
      0.611
R2601_26031
2’-deoxycytidine 5’-triphosphate deaminase (358 aa)
 
          0.608
R2601_10974
Uncharacterized protein (166 aa)
 
          0.595
R2601_15622
Uncharacterized protein (130 aa)
   
          0.586
R2601_14995
HD domain protein (188 aa)
   
          0.582
R2601_26051
Beta-N-acetylhexosaminidase (335 aa)
   
   
  0.574
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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