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greA protein (Pelagibaca bermudensis) - STRING interaction network
"greA" - Transcript cleavage factor GreA in Pelagibaca bermudensis
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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greATranscript cleavage factor GreA ; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3’terminus. GreA releases sequences of 2 to 3 nucleotides (156 aa)    
Predicted Functional Partners:
R2601_13819
Uncharacterized protein (272 aa)
 
          0.886
rpoZ
Transcriptase subunit omega ; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (117 aa)
 
 
  0.814
rpoC
Transcriptase subunit beta’ ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1418 aa)
       
 
  0.811
rpoB
Transcriptase subunit beta ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1378 aa)
   
 
 
  0.796
rpoA
Transcriptase subunit alpha ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (338 aa)
 
 
 
  0.791
nusA
Transcription termination/antitermination protein NusA ; Participates in both transcription termination and antitermination (542 aa)
 
 
 
  0.732
murI
Glutamate racemase ; Provides the (R)-glutamate required for cell wall biosynthesis (270 aa)
     
 
  0.705
rho
ATP-dependent helicase Rho ; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho’s RNA-dependent ATPase activity, and release of the mRNA from the DNA template (423 aa)
 
 
 
  0.696
nusG
Transcription termination/antitermination protein NusG ; Participates in transcription elongation, termination and antitermination (177 aa)
   
   
  0.695
R2601_16695
FtsK/SpoIIIE family protein (1137 aa)
 
   
  0.665
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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