STRINGSTRING
R2601_13819 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_13819" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_13819Uncharacterized protein (272 aa)    
Predicted Functional Partners:
R2601_13830
Uncharacterized protein (50 aa)
 
          0.941
greA
Transcript cleavage factor GreA ; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3’terminus. GreA releases sequences of 2 to 3 nucleotides (156 aa)
 
          0.886
R2601_19614
Lipoprotein, putative (312 aa)
   
          0.778
R2601_13664
Uncharacterized protein (130 aa)
   
          0.778
R2601_10879
Uncharacterized protein (71 aa)
   
          0.778
R2601_25456
Uncharacterized protein (173 aa)
   
          0.777
R2601_17749
Uncharacterized protein (174 aa)
   
          0.775
R2601_13845
Lipoprotein, putative (221 aa)
   
          0.775
R2601_07113
Lipoprotein, putative (203 aa)
   
          0.774
R2601_17624
Uncharacterized protein (445 aa)
   
          0.773
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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