STRINGSTRING
R2601_13840 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_13840" - Putative transmembrane protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_13840Putative transmembrane protein (108 aa)    
Predicted Functional Partners:
R2601_13835
AzlC family protein (234 aa)
 
          0.961
R2601_17769
Uncharacterized protein (110 aa)
   
          0.688
R2601_11906
Uncharacterized protein (102 aa)
   
          0.625
R2601_09375
Uncharacterized protein (154 aa)
   
          0.625
R2601_21206
Uncharacterized protein (64 aa)
   
          0.624
R2601_22047
Uncharacterized protein (541 aa)
   
          0.622
R2601_09350
Arsenate reductase (148 aa)
   
          0.585
R2601_13915
Uncharacterized protein (182 aa)
   
          0.576
R2601_09355
UPF0262 protein R2601_09355 (159 aa)
   
          0.576
R2601_10659
Helicase, ATP-dependent, putative (511 aa)
   
          0.568
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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