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R2601_13855 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_13855" - Metallo-beta-lactamase family protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_13855Metallo-beta-lactamase family protein (342 aa)    
Predicted Functional Partners:
R2601_13860
Acyl-CoA dehydrogenase family protein (566 aa)
 
   
  0.887
R2601_00255
FAD linked oxidase (946 aa)
   
 
  0.818
R2601_16335
Uncharacterized protein (557 aa)
   
 
  0.770
R2601_16630
2,4-dienoyl-CoA reductase (669 aa)
   
 
  0.759
R2601_01613
2,4-dienoyl-CoA reductase (NADPH) protein (678 aa)
   
 
  0.759
R2601_18690
Sarcosine oxidase alpha subunit (996 aa)
   
 
  0.672
R2601_10189
Sarcosine oxidase, alpha subunit family protein (1012 aa)
   
 
  0.672
R2601_13865
L-threonylcarbamoyladenylate synthase ; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine (318 aa)
   
        0.652
R2601_13845
Lipoprotein, putative (221 aa)
 
          0.617
R2601_10659
Helicase, ATP-dependent, putative (511 aa)
 
          0.593
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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