STRINGSTRING
R2601_13875 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_13875" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_13875Uncharacterized protein (158 aa)    
Predicted Functional Partners:
R2601_13870
Uncharacterized protein (30 aa)
              0.859
R2601_13925
Dihydroorotase (427 aa)
 
        0.766
R2601_13880
Uncharacterized protein (234 aa)
 
          0.727
pyrB
Aspartate transcarbamylase (316 aa)
 
        0.651
secB
Protein-export protein SecB ; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA (169 aa)
   
          0.623
R2601_10219
Putative pre-16S rRNA nuclease ; Could be a nuclease involved in processing of the 5’-end of pre-16S rRNA (158 aa)
   
   
  0.594
R2601_07023
Thiol-disulfide interchange protein dsbD 1 (709 aa)
              0.548
R2601_17754
Ribosomal RNA small subunit methyltransferase E ; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit (208 aa)
   
 
  0.542
rimK
Probable alpha-L-glutamate ligase (461 aa)
   
        0.502
R2601_20551
Glutathione synthase/Ribosomal protein S6 modification enzyme (Glutaminyl transferase)-like (293 aa)
   
        0.473
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (7%) [HD]