STRINGSTRING
R2601_13880 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_13880" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_13880Uncharacterized protein (234 aa)    
Predicted Functional Partners:
R2601_13875
Uncharacterized protein (158 aa)
 
          0.727
R2601_17769
Uncharacterized protein (110 aa)
   
          0.695
R2601_21527
27 kDa outer membrane protein, putative (257 aa)
 
   
  0.576
R2601_15070
HemY domain protein (511 aa)
   
          0.555
R2601_10659
Helicase, ATP-dependent, putative (511 aa)
   
          0.549
R2601_19599
DNA polymerase III subunit delta (372 aa)
   
          0.530
R2601_07063
27kDa outer membrane protein (210 aa)
 
   
  0.527
R2601_10474
Uncharacterized protein (178 aa)
   
          0.498
R2601_13870
Uncharacterized protein (30 aa)
              0.472
R2601_17072
Uncharacterized protein (208 aa)
   
          0.466
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
Server load: low (10%) [HD]