STRINGSTRING
R2601_13890 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_13890" - Efflux transporter, RND family, MFP subunit in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_13890Efflux transporter, RND family, MFP subunit (487 aa)    
Predicted Functional Partners:
R2601_13885
Transporter, AcrB/AcrD/AcrF family protein (1129 aa)
 
          0.969
R2601_26331
Transporter, AcrB/AcrD/AcrF family protein (1236 aa)
 
          0.738
R2601_24694
TfoX domain protein (114 aa)
   
          0.694
R2601_12915
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (87 aa)
   
          0.682
R2601_13895
Molybdenum cofactor biosynthesis protein B ; May be involved in the biosynthesis of molybdopterin (180 aa)
 
          0.674
R2601_21642
TRAP transporter, DctM subunit, putative (784 aa)
   
          0.642
R2601_21637
Uncharacterized protein (309 aa)
   
          0.625
R2601_19614
Lipoprotein, putative (312 aa)
   
          0.594
R2601_09617
Uncharacterized protein (206 aa)
   
          0.592
R2601_15417
Uncharacterized protein (867 aa)
   
          0.583
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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