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R2601_13950 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_13950" - 2-hydroxychromene-2-carboxylate isomerase in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_139502-hydroxychromene-2-carboxylate isomerase (199 aa)    
Predicted Functional Partners:
prs
Phosphoribosyl pyrophosphate synthase ; Involved in the biosynthesis of ribose 1,5-bisphosphate. Catalyzes the transfer of pyrophosphoryl group from ATP to ribose- 5-phosphate to yield phosphoribosyl diphosphate (PRPP) and AMP (336 aa)
   
        0.683
R2601_25781
Glutathione S-transferase family protein (212 aa)
 
 
    0.611
R2601_26176
Cytochrome P450 family protein (451 aa)
     
    0.459
R2601_22387
Cytochrome P450 hydroxylase (390 aa)
     
    0.459
R2601_20149
Cytochrome P450 (450 aa)
     
    0.459
R2601_08001
Uncharacterized protein (400 aa)
     
    0.459
R2601_05478
Cytochrome P450-like protein (432 aa)
     
    0.459
R2601_02223
P-450 monoxygenase (391 aa)
     
    0.459
R2601_05668
Uncharacterized protein (147 aa)
   
          0.456
R2601_12378
Probable glutathione S-transferase protein (286 aa)
   
 
    0.435
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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