STRINGSTRING
R2601_14010 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_14010" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_14010Uncharacterized protein (225 aa)    
Predicted Functional Partners:
R2601_14015
Peptide/opine/nickel uptake family ABC transporter, periplasmic substrate-binding protein (525 aa)
 
          0.873
R2601_09200
Flavin-containing monooxygenase FMO (428 aa)
 
        0.846
R2601_14025
Peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein (625 aa)
 
          0.778
R2601_11384
Endoribonuclease L-PSP family protein (138 aa)
 
          0.773
R2601_14020
Peptide/opine/nickel uptake family ABC transporter, permease protein (315 aa)
 
          0.648
R2601_09188
Putative transcriptional regulator (180 aa)
 
          0.593
R2601_14005
Transcriptional regulator, GntR family protein (237 aa)
 
          0.564
R2601_23885
Uncharacterized protein (145 aa)
   
          0.534
R2601_14030
Peptide/opine/nickel uptake family ABC transporter, ATP-binding protein (316 aa)
 
          0.527
R2601_12760
N-carbamoyl-L-amino acid amidohydrolase (399 aa)
 
        0.526
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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