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R2601_14030 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_14030" - Peptide/opine/nickel uptake family ABC transporter, ATP-binding protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_14030Peptide/opine/nickel uptake family ABC transporter, ATP-binding protein (316 aa)    
Predicted Functional Partners:
R2601_14020
Peptide/opine/nickel uptake family ABC transporter, permease protein (315 aa)
  0.994
R2601_14025
Peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein (625 aa)
 
0.990
R2601_14015
Peptide/opine/nickel uptake family ABC transporter, periplasmic substrate-binding protein (525 aa)
 
  0.982
R2601_17519
ABC-type dipeptide/oligopeptide/nickel transport system, permease components (311 aa)
  0.978
R2601_17514
ABC-type dipeptide/oligopeptide/nickel transport system, permease components (307 aa)
  0.971
R2601_03038
ABC transporter, membrane spanning protein (300 aa)
  0.969
R2601_05813
Peptide ABC transporter, permease protein (306 aa)
  0.968
R2601_01190
Putative oligopeptide ABC transporter, permease component (270 aa)
  0.965
R2601_21502
ABC peptide transporter, inner membrane subunit (116 aa)
  0.959
R2601_23695
Peptide/nickel/opine uptake family ABC transporter, permease protein (334 aa)
  0.950
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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