STRINGSTRING
R2601_14150 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_14150" - Uncharacterized protein in Pelagibaca bermudensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_14150Uncharacterized protein (217 aa)    
Predicted Functional Partners:
nusA
Transcription termination/antitermination protein NusA ; Participates in both transcription termination and antitermination (542 aa)
   
        0.913
infB
Translation initiation factor IF-2 ; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex (822 aa)
   
   
  0.912
rimP
Ribosome maturation factor RimP ; Required for maturation of 30S ribosomal subunits (195 aa)
   
   
  0.912
R2601_16900
Uncharacterized protein (166 aa)
   
          0.729
R2601_26391
Glutamate-ammonia-ligase adenylyltransferase ; Adenylation and deadenylation of glutamate--ammonia ligase (937 aa)
   
          0.694
R2601_23670
Cobalt chelatase, pCobT subunit (625 aa)
   
          0.687
trmB
tRNA(m7G46)-methyltransferase ; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA (237 aa)
 
          0.632
R2601_14165
Ribonuclease R (235 aa)
 
        0.616
R2601_14170
Ribonuclease R (506 aa)
 
        0.604
truB
tRNA-uridine isomerase ; Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (304 aa)
 
          0.596
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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