STRINGSTRING
R2601_14195 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_14195" - Cation antiporter in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_14195Cation antiporter (Na+/Ca2+) (342 aa)    
Predicted Functional Partners:
R2601_14200
Uncharacterized protein (81 aa)
 
          0.874
R2601_24115
Uncharacterized protein (287 aa)
   
          0.686
R2601_11239
K+-dependent Na+/Ca+ exchanger related-protein (320 aa)
   
          0.639
R2601_14190
Uncharacterized protein (110 aa)
              0.637
dapD
Tetrahydrodipicolinate N-succinyltransferase (275 aa)
              0.517
R2601_20269
Bacteriophytochrome (Light-regulated signal transduction histidine kinase), PhyB5 (519 aa)
   
          0.515
R2601_26066
Sodium/hydrogen exchanger (618 aa)
 
 
  0.490
R2601_23318
Inosine-5’-monophosphate dehydrogenase (482 aa)
   
        0.464
R2601_17279
ATPase, E1-E2 type (915 aa)
   
        0.461
R2601_15507
Uncharacterized protein (165 aa)
         
  0.459
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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