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dapD protein (Pelagibaca bermudensis) - STRING interaction network
"dapD" - Tetrahydrodipicolinate N-succinyltransferase in Pelagibaca bermudensis
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
dapDTetrahydrodipicolinate N-succinyltransferase (275 aa)    
Predicted Functional Partners:
argD
Acetylornithine aminotransferase (398 aa)
   
 
  0.990
R2601_08626
4-hydroxy-tetrahydrodipicolinate reductase ; Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate (226 aa)
 
 
  0.978
dapE
N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase ; Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls (381 aa)
 
   
  0.941
R2601_16690
Aminotransferase, classes I and II (393 aa)
 
 
  0.937
dapA
4-hydroxy-tetrahydrodipicolinate synthase ; Catalyzes the condensation of (S)-aspartate-beta- semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) (286 aa)
 
   
  0.857
dapF
Diaminopimelate epimerase ; Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan (279 aa)
   
   
  0.827
R2601_21537
Aminotransferase, classes I and II (381 aa)
   
 
  0.802
R2601_18950
Aspartate aminotransferase (400 aa)
   
 
  0.802
R2601_01788
Putative aminotransferase protein (399 aa)
   
 
  0.802
R2601_00025
Dihydrodipicolinate synthase (292 aa)
 
   
  0.787
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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