STRINGSTRING
R2601_14225 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_14225" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_14225Uncharacterized protein (371 aa)    
Predicted Functional Partners:
R2601_14220
Carboxyl-terminal protease family protein (448 aa)
   
   
  0.903
gpmI
2,3-bisphosphoglycerate-independent phosphoglycerate mutase ; Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate (504 aa)
              0.887
nudH
(Di)nucleoside polyphosphate hydrolase ; Accelerates the degradation of transcripts by removing pyrophosphate from the 5’-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage (160 aa)
         
  0.797
R2601_25456
Uncharacterized protein (173 aa)
   
          0.731
R2601_16977
Uncharacterized protein (296 aa)
   
          0.728
R2601_19352
Peptidoglycan binding domain protein (579 aa)
   
          0.710
R2601_13214
Uncharacterized protein (169 aa)
   
          0.676
R2601_21817
Uncharacterized protein (133 aa)
   
          0.657
R2601_13819
Uncharacterized protein (272 aa)
   
          0.645
R2601_10884
Cell division ATP-binding protein FtsE (225 aa)
 
        0.644
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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