STRINGSTRING
R2601_14355 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_14355" - Uncharacterized protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_14355Uncharacterized protein (129 aa)    
Predicted Functional Partners:
R2601_14350
Oxidoreductase domain protein (204 aa)
              0.650
R2601_14490
Flagellar protein FlaF, putative (125 aa)
   
          0.561
R2601_20411
Spermidine/putrescine ABC transporter, periplasmic substrate-binding protein (381 aa)
   
          0.515
R2601_25996
Lipoprotein, SmpA/OmlA family (139 aa)
   
          0.462
serS
Seryl-tRNA(Ser/Sec) synthetase ; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) (430 aa)
   
        0.460
R2601_14495
Flagellin synthesis repressor protein FlbT, putative (134 aa)
   
          0.451
R2601_11916
Pterin carbinolamine dehydratase (96 aa)
              0.450
R2601_24435
Uncharacterized protein (104 aa)
   
          0.433
R2601_15622
Uncharacterized protein (130 aa)
   
          0.429
R2601_00465
FlaF protein (145 aa)
   
          0.425
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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