STRINGSTRING
R2601_14395 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_14395" - Possible phospodiesterase in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_14395Possible phospodiesterase (275 aa)    
Predicted Functional Partners:
R2601_14400
Uncharacterized protein (309 aa)
 
 
    0.979
R2601_14390
Uncharacterized protein (71 aa)
              0.731
guaA
Glutamine amidotransferase ; Catalyzes the synthesis of GMP from XMP (521 aa)
       
    0.615
R2601_00160
Two-component system sensor protein (807 aa)
   
 
  0.614
R2601_04738
Phosphoglucomutase/phosphomannomutase (457 aa)
 
   
    0.498
R2601_04933
Uncharacterized protein (222 aa)
   
          0.488
R2601_25366
Tellurite resistance protein (375 aa)
   
        0.466
R2601_24280
ABC Fe+3 siderophore transporter, periplasmic substrate-binding protein (333 aa)
   
        0.463
R2601_20511
Iron-binding periplasmic protein (323 aa)
   
        0.463
R2601_19994
Uncharacterized protein (333 aa)
   
        0.463
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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