STRINGSTRING
R2601_14640 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_14640" - Smr domain protein in Pelagibaca bermudensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_14640Smr domain protein (181 aa)    
Predicted Functional Partners:
R2601_14650
Transporter, Tim44 family protein (219 aa)
 
          0.848
R2601_14645
MltA/3D domain protein (347 aa)
              0.788
R2601_14655
FxsA (183 aa)
 
          0.765
secB
Protein-export protein SecB ; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA (169 aa)
 
          0.746
R2601_16720
L-threonine aldolase, low-specificity, putative (359 aa)
       
      0.566
R2601_25486
Peptidase, M48 family protein (230 aa)
       
      0.535
htpX
Protease HtpX homolog (315 aa)
       
      0.535
R2601_25386
Transporter, BCCT family protein (548 aa)
       
      0.508
R2601_23098
Putative transport protein (209 aa)
       
      0.508
R2601_23091
Putative transport protein (302 aa)
       
      0.508
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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