STRINGSTRING
R2601_14830 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_14830" - PolyA polymerase family protein in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_14830PolyA polymerase family protein (363 aa)    
Predicted Functional Partners:
R2601_11004
Polyribonucleotide nucleotidyltransferase (463 aa)
   
  0.920
rne
Ribonuclease E ; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs (985 aa)
   
  0.880
R2601_14835
Lysine exporter family protein (LYSE/YGGA) (194 aa)
              0.845
R2601_14170
Ribonuclease R (506 aa)
   
  0.843
R2601_11009
Polyribonucleotide nucleotidyltransferase (250 aa)
   
  0.826
rnpA
Protein C5 ; RNaseP catalyzes the removal of the 5’-leader sequence from pre-tRNA to produce the mature 5’-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5’-leader sequence and broadening the substrate specificity of the ribozyme (120 aa)
     
 
  0.816
hfq
RNA-binding protein Hfq ; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs (79 aa)
       
 
  0.807
R2601_09320
Ribonuclease, Rne/Rng family protein (283 aa)
   
  0.802
R2601_14825
Hydrolase, NUDIX family protein (191 aa)
   
   
  0.786
R2601_14850
23S rRNA (Uracil-5-)-methyltransferase rumA (407 aa)
   
      0.783
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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