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R2601_14850 protein (Pelagibaca bermudensis) - STRING interaction network
"R2601_14850" - 23S rRNA in Pelagibaca bermudensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R2601_1485023S rRNA (Uracil-5-)-methyltransferase rumA (407 aa)    
Predicted Functional Partners:
R2601_23323
Possible NOL1/NOP2/sun family protein (384 aa)
   
  0.853
R2601_08616
Ribosomal RNA small subunit methyltransferase B, putative (420 aa)
   
  0.843
R2601_14830
PolyA polymerase family protein (363 aa)
   
      0.783
R2601_14820
33 kDa chaperonin ; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress (327 aa)
 
        0.780
R2601_14845
ABC multidrug efflux pump, fused ATPase and inner membrane subunits (615 aa)
   
        0.738
R2601_14840
ABC transporter, transmembrane ATP-binding protein (614 aa)
   
        0.738
R2601_25361
O-acetylserine (Thiol)-lyase, cysteine synthase (342 aa)
   
      0.734
R2601_14825
Hydrolase, NUDIX family protein (191 aa)
   
 
  0.723
truA
tRNA-uridine isomerase I ; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs (255 aa)
   
   
  0.672
R2601_24355
DNA polymerase III subunit chi (152 aa)
 
          0.653
Your Current Organism:
Pelagibaca bermudensis
NCBI taxonomy Id: 314265
Other names: P. bermudensis HTCC2601, Pelagibaca, Pelagibaca Cho and Giovannoni 2006, Pelagibaca bermudensis, Pelagibaca bermudensis Cho and Giovannoni 2006, Pelagibaca bermudensis HTCC2601, Pelagibaca bermudensis str. HTCC2601, Pelagibaca bermudensis strain HTCC2601, Roseovarius sp. HTCC2601
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